Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs753725
rs753725
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0202239
Disease:
Uric acid measurement (procedure)
T 0.700 GeneticVariation GWASCAT Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels. 31578528 2019
dbSNP: rs1264308
rs1264308
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0678222
Disease:
Breast Carcinoma
0.010 GeneticVariation BEFREE We identified four independent SNPs associated with BC risk, BIVM-ERCC5 rs1323697_C (OR = 1.06, 95% CI = 1.03-1.10), GTF2H4 rs1264308_T (OR = 0.93, 95% CI = 0.89-0.97), COPS2 rs141308737_C deletion (OR = 1.06, 95% CI = 1.03-1.09) and ELL rs1469412_C (OR = 0.93, 95% CI = 0.90-0.96). 31026346 2019
dbSNP: rs1264308
rs1264308
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.010 GeneticVariation BEFREE We identified four independent SNPs associated with BC risk, BIVM-ERCC5 rs1323697_C (OR = 1.06, 95% CI = 1.03-1.10), GTF2H4 rs1264308_T (OR = 0.93, 95% CI = 0.89-0.97), COPS2 rs141308737_C deletion (OR = 1.06, 95% CI = 1.03-1.09) and ELL rs1469412_C (OR = 0.93, 95% CI = 0.90-0.96). 31026346 2019
dbSNP: rs367837827
rs367837827
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C3203102
Disease:
Idiopathic pulmonary arterial hypertension
0.010 GeneticVariation BEFREE We present a case of an infant with lactic acidosis, failure to thrive, and severe primary pulmonary hypertension who was found to be a compound heterozygote for two novel VARS2 variants (c.1940C>T, p.(Thr647Met) and c.2318G>A, p.(Arg773Gln)). 31529142 2019
dbSNP: rs367837827
rs367837827
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0152171
Disease:
Idiopathic pulmonary hypertension
0.010 GeneticVariation BEFREE We present a case of an infant with lactic acidosis, failure to thrive, and severe primary pulmonary hypertension who was found to be a compound heterozygote for two novel VARS2 variants (c.1940C>T, p.(Thr647Met) and c.2318G>A, p.(Arg773Gln)). 31529142 2019
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0424605
Disease:
Developmental delay (disorder)
0.010 GeneticVariation BEFREE Among these, the rare homozygous c.1100C > T (p.Thr367Ile) mutation variably presents with progressive developmental delay, axial hypotonia, limbs spasticity, drug-resistant epilepsy leading, in some cases, to premature death. 31064326 2019
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0557874
Disease:
Global developmental delay
0.010 GeneticVariation BEFREE Among these, the rare homozygous c.1100C > T (p.Thr367Ile) mutation variably presents with progressive developmental delay, axial hypotonia, limbs spasticity, drug-resistant epilepsy leading, in some cases, to premature death. 31064326 2019
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026838
Disease:
Muscle Spasticity
0.010 GeneticVariation BEFREE Among these, the rare homozygous c.1100C > T (p.Thr367Ile) mutation variably presents with progressive developmental delay, axial hypotonia, limbs spasticity, drug-resistant epilepsy leading, in some cases, to premature death. 31064326 2019
dbSNP: rs758655746
rs758655746
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0037231
Disease:
Sjogren-Larsson Syndrome
0.010 GeneticVariation BEFREE The MOL1592 family included three affected subjects with crystalline retinopathy, skin ichthyosis, short stature and congenital adrenal hypoplasia, and were found to harbour a homozygous nonsense mutation (c.682C>T, p.Arg228Cys) in ALDH3A2, reported to cause Sjögren-Larsson syndrome (SLS). 30925032 2019
dbSNP: rs1157637439
rs1157637439
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0001125
Disease:
Acidosis, Lactic
0.010 GeneticVariation BEFREE We report the novel compound heterozygous pathogenic VARS2 mutations c.643 C > T (p. His215Tyr) and c.1354 A > G (p. Met452Val) in a female infant who presented with poor sucking at birth, poor activity, hyporeflexia, hypertonia, persistent pulmonary hypertension of newborn (PPHN), metabolic acidosis, severe lactic acidosis, expansion and hypertrophic cardiomyopathy. 30458719 2018
dbSNP: rs1157637439
rs1157637439
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0007194
Disease:
Hypertrophic Cardiomyopathy
0.010 GeneticVariation BEFREE We report the novel compound heterozygous pathogenic VARS2 mutations c.643 C > T (p. His215Tyr) and c.1354 A > G (p. Met452Val) in a female infant who presented with poor sucking at birth, poor activity, hyporeflexia, hypertonia, persistent pulmonary hypertension of newborn (PPHN), metabolic acidosis, severe lactic acidosis, expansion and hypertrophic cardiomyopathy. 30458719 2018
dbSNP: rs1157637439
rs1157637439
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4551472
Disease:
Hypertrophic obstructive cardiomyopathy
0.010 GeneticVariation BEFREE We report the novel compound heterozygous pathogenic VARS2 mutations c.643 C > T (p. His215Tyr) and c.1354 A > G (p. Met452Val) in a female infant who presented with poor sucking at birth, poor activity, hyporeflexia, hypertonia, persistent pulmonary hypertension of newborn (PPHN), metabolic acidosis, severe lactic acidosis, expansion and hypertrophic cardiomyopathy. 30458719 2018
dbSNP: rs1157637439
rs1157637439
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0031190
Disease:
Persistent Fetal Circulation Syndrome
0.010 GeneticVariation BEFREE We report the novel compound heterozygous pathogenic VARS2 mutations c.643 C > T (p. His215Tyr) and c.1354 A > G (p. Met452Val) in a female infant who presented with poor sucking at birth, poor activity, hyporeflexia, hypertonia, persistent pulmonary hypertension of newborn (PPHN), metabolic acidosis, severe lactic acidosis, expansion and hypertrophic cardiomyopathy. 30458719 2018
dbSNP: rs114274879
rs114274879
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0149782
Disease:
Squamous cell carcinoma of lung
T 0.700 GeneticVariation GWASCAT Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes. 28604730 2017
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C1306460
Disease:
Primary malignant neoplasm of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0684249
Disease:
Carcinoma of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0242379
Disease:
Malignant neoplasm of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs9394021
rs9394021
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0151517
Disease:
Complete atrioventricular block
0.010 GeneticVariation BEFREE Further linkage disequilibrium and conditional analysis identified two variants (rs9394021 and rs2517459) as new markers of genetic risk factors for CHB rather than the reported SNP from our previous study (rs2532932). 25404243 2015
dbSNP: rs587777583
rs587777583
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014